io.github.open-mtor-atlas/mtor-atlas · v1.3.0 · data-and-databases
Oliver's mTOR Atlas is healthy: it completed an MCP handshake in 2286 ms and exposes 13 tools.
Evidence-labelled mTOR research: studies, entities, pathway claims, contradictions, open questions.
Endpoint: https://mtor-atlas-mcp.mtor-atlas.workers.dev/mcp (streamable-http)
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| Users (last 30 days) | 0 |
| Handshake | Healthy |
| Auth needed | None |
| Tool count | 13 |
| Latency | 2286 ms |
| Last checked (UTC) | 2026-10-16T11:05:49.045Z |
| Checked (UTC) | Status | Latency | Error |
|---|---|---|---|
| 2026-10-16T11:05:49.045Z | Healthy | 2286 | |
| 2026-10-15T06:20:35.958Z | Healthy | 2971 |
atlas_about | Dataset version, corpus snapshot date, counts, evidence-code legend and how to cite the dataset. derived_counts adds figures computed from the relations (flagged contested, with conflicting studies, either) so they can be compared with find_contradictions. |
search_studies | Search the curated studies by keywords, optionally filtered by evidence code, a linked entity (gene, drug, disease...) and year range. Searches title, finding, authors (author-list form "Sabatini DM" and full names of profiled authors), PMID, DOI, PMCID, linked entities and their synonyms, journal, |
get_study | Full record for one study by Atlas ID (e.g. "SAB1994"), PMID, DOI or PMCID: abstract excerpt, extracted findings, linked entities, the relations it supports or contradicts, related open questions. |
search_entities | Find genes/proteins, complexes, drugs, diseases, processes, nutrients and outcomes by name or synonym. Each result says where it matched (match_field: name, synonym or description); use match="name" to leave out description-only hits. |
get_entity | One entity (gene/protein, complex, drug, disease, process...) with its linked studies as short cards (first studies_limit) and every pathway relation it takes part in as a one-line claim. Accepts an id, a name or a synonym. |
find_relations | Signed, evidence-linked pathway relations (claims such as "Rheb activates mTORC1"). Filter by an entity on either end, by source/target, effect, contested status or minimum strength of the best supporting evidence. |
get_relation | One pathway relation by ID (e.g. "RHEB-MTORC1"): mechanism, boundary conditions, confidence, supporting and conflicting studies. |
evidence_between | Direct curated relations between two entities (either direction) with full cards for the supporting and conflicting studies. Answers questions such as "what is the evidence that A acts on B?". A study that repeats within the answer is sent in full once and afterwards as a short card with full_card_i |
find_contradictions | Relations the Atlas marks as contested or that carry conflicting studies, with both sides of the evidence. status says which; breakdown splits the total. A contested relation with no conflicting study listed is flagged conflicting_studies_missing and shows related relations named in its text. Paged: |
list_questions | The Atlas's open questions (evidence gaps with testable hypotheses) and frontier questions. Paged. By default still_open is shortened at a sentence boundary (still_open_truncated); get_question has the full text, or pass brief=false. |
get_question | One open or frontier question by ID (e.g. "H1", "F2"): the gap, what changed, what is still open, how it could be tested, linked studies. |
search_authors | People in the Atlas by full name ("Claudio De Virgilio"), author-list form ("De Virgilio C"), ORCID or lab. results are authors with a profile page (full name, ORCID, lab, their study IDs); in_author_lists are matching names in study author lists without a profile. |
get_author | One profiled author by profile id ("claudio-de-virgilio"), full name, author-list form or ORCID: lab, role, profile URL and short cards of their studies in the Atlas. |